U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX3164816: Transcriptomic resource of African green monkey: 2008141_VMT51223_Area46
1 ILLUMINA (Illumina HiSeq 4000) run: 63.1M spots, 15.1G bases, 5.5Gb downloads

Design: TruSeq RNAv2 (100ng) + RiboZero Gold; PE 2x120 HO 4K
Submitted by: UCLA
Study: Transcriptomic resource of African green monkey (Chlorocebus aethiops sabaues)
show Abstracthide Abstract
Characterization of transcriptomic variation is emerging as a critical tool for understanding how quantitative trait loci (QTL) contribute to complex phenotypes. Human transcriptomic studies are limited by factors such as the feasibility of invasive tissue collection or variable environmental exposures that can be readily overcome in non-human primate (NHP) models. We characterized transcriptomic variation across multiple tissues and developmental stages and between individuals in 59 vervet monkeys from the Vervet Research Colony extended pedigree. We conducted RNA sequencing across early (7, 90 days, and one year) and later (1.25, 1.5, 1.75, 2, 2.5, 3, and 4+ years old) developmental time points in 6 individuals at each stage in five tissue types: two brain tissues from hippocampus and caudate, two endocrine tissues (pituitary and adrenal) and two peripheral tissues serving as a source of biomarkers (blood and fibroblasts)
Sample: 2008141_VMT51223
SAMN07562341 • SRS2495538 • All experiments • All runs
Library:
Name: 2008141_VMT51223_Area46
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 63.1M spots, 15.1G bases, 5.5Gb
Run# of Spots# of BasesSizePublished
SRR601087163,115,16215.1G5.5Gb2017-09-07

ID:
4465626

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...